mappgene is a SARS-CoV-2 genomic sequence analysis pipeline designed for parallel HPC. It wraps V-pipe and iVar with a collection of useful scripts for deployment in almost any Linux environment. Requires Python 3.7+ and Singularity.
Lawrence Livermore National Laboratory 7000 East Avenue • Livermore, CA 94550
Operated by Lawrence Livermore National Security, LLC, for the Department of Energy's National Nuclear Security Administration.